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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
35
DNA accessibility
4
DNA methylation
Date released
92
August, 2021
36
February, 2023
4
July, 2019
3
February, 2020
3
March, 2020
Available data
bigWig
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
Organism
138
Homo sapiens
Biosample type
137
tissue
1
primary cell
Organ
228
pancreas
209
kidney
187
epithelium
138
heart
93
bone element
83
connective tissue
73
liver
54
eye
46
adipose tissue
46
vasculature
45
blood vessel
39
artery
39
brain
23
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
35
GRCh38
2
hg19
Lab
138
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
bigWig
bam
BIOSAMPLE
ASSAY
138 results
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single cell RNA-seq
ATAC-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
1
heart left ventricle
18
1
1
2
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
1
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