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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
pCHi-C
2
RRBS
2
WGBS
Assay category
93
Transcription
43
DNA accessibility
20
DNA binding
4
DNA methylation
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
4
July, 2019
February, 2020
3
March, 2020
2
June, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
165
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
Organism
163
Homo sapiens
Biosample type
150
tissue
10
cell line
3
primary cell
Organ
315
pancreas
222
kidney
217
epithelium
166
liver
163
heart
112
connective tissue
101
bone element
75
vasculature
74
blood vessel
64
adipose tissue
54
artery
54
eye
52
brain
28
limb
24
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
163
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
163
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
hic
bigWig
month_released!
February, 2020
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
heart left ventricle
18
6
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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