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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
18
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
164
DNA binding
18
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
139
histone
139
histone modification
76
broad histone mark
63
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
322
August, 2017
268
October, 2019
218
June, 2019
209
May, 2021
200
May, 2022
183
February, 2023
168
August, 2021
152
May, 2020
138
February, 2021
120
May, 2019
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
40
May, 2024
27
November, 2018
25
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
7
March, 2020
6
November, 2020
4
July, 2018
4
March, 2019
2
March, 2023
1
August, 2018
1
August, 2022
1
December, 2019
Available data
298
bigWig
272
bam
tsv
132
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
209
Homo sapiens
Biosample type
154
primary cell
53
in vitro differentiated cells
cell line
2
tissue
Organ
4
pancreas
3
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
108
AMP
101
T1D
Genome assembly (visualization)
142
hg19
102
GRCh38
Lab
184
Kyle Gaulton, UCSD
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
hic
tsv
biosample_type!
cell line
BIOSAMPLE
ASSAY
209 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
cardiomyocytes
3
pancreatic PP cell
3
tissue
pancreas
1
thymus
1
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