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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
129
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
363
November, 2017
256
May, 2020
235
May, 2021
230
August, 2017
207
June, 2019
164
July, 2018
132
October, 2019
87
November, 2018
86
May, 2019
82
July, 2019
78
December, 2017
65
October, 2018
57
April, 2019
57
September, 2018
55
November, 2019
49
April, 2018
40
August, 2021
34
December, 2018
31
February, 2018
27
January, 2019
24
May, 2022
14
October, 2017
13
March, 2020
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
235
fastq
230
bam
212
bigWig
92
bed narrowPeak
89
tsv
56
tagAlign
30
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
10
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
225
Homo sapiens
Biosample type
152
tissue
42
in vitro differentiated cells
36
primary cell
Organ
140
pancreas
58
connective tissue
21
epithelium
21
liver
16
adipose tissue
Project
230
AMP
Genome assembly (visualization)
200
hg19
197
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
files.file_type!
hic
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
20
white adipose tissue
12
pancreas
10
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
41
1
primary cell
skeletal muscle myoblast
9
2
pancreatic alpha cell
9
1
pancreatic beta cell
9
1
pancreatic endocrine cell
4
pancreatic acinar cell
1
See all biosamples
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