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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ATAC-seq
207
DNase-seq
84
snATAC-seq
3
FAIRE-seq
Assay category
1829
Transcription
1572
DNA binding
820
DNA accessibility
82
DNA methylation
11
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
32
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
482
bed narrowPeak
379
bam
340
bigWig
231
bigBed narrowPeak
209
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
93
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
tar
Organism
819
Homo sapiens
Biosample type
465
tissue
282
primary cell
42
in vitro differentiated cells
31
cell line
Organ
168
pancreas
163
kidney
119
epithelium
77
heart
57
vasculature
55
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
32
eye
27
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
2
spleen
2
vein
1
pituitary gland
1
skin of body
Project
684
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
442
hg19
434
GRCh38
Lab
550
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
hic
tar
month_released!
August, 2017
BIOSAMPLE
ASSAY
820 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
7
coronary artery
36
2
liver
20
2
heart
18
+ See 59 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
34
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
22
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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