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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
18
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
168
Homo sapiens
Biosample type
147
tissue
21
primary cell
Organ
748
pancreas
669
liver
559
connective tissue
482
epithelium
434
adipose tissue
384
heart
353
kidney
227
vasculature
221
blood vessel
168
brain
159
bone element
135
artery
122
limb
69
blood
69
bodily fluid
68
musculature of body
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
135
GRCh38
121
hg19
Lab
168
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
hic
tagAlign
month_released!
August, 2017
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 57 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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