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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
8
control
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
146
bam
111
bigWig
110
bed narrowPeak
88
fastq
73
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
hic
1
csv
Organism
147
Homo sapiens
Biosample type
76
cell line
65
tissue
5
in vitro differentiated cells
1
primary cell
Organ
60
pancreas
53
liver
15
blood
15
bodily fluid
15
epithelium
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
147
AMP
Genome assembly (visualization)
136
GRCh38
128
hg19
Lab
147
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
hic
BIOSAMPLE
ASSAY
147 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
GM12878
15
tissue
islet of Langerhans
19
19
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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