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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
89
total RNA-seq
13
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
190
DNA binding
89
Transcription
17
DNA accessibility
8
DNA methylation
Target of assay
110
histone modification
109
histone
55
broad histone mark
53
narrow histone mark
47
transcription factor
33
control
8
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
304
fastq
297
bam
286
bigWig
154
bed narrowPeak
99
tagAlign
89
tsv
48
bigBed narrowPeak
45
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
297
Homo sapiens
Biosample type
192
tissue
58
primary cell
54
in vitro differentiated cells
Organ
173
pancreas
73
connective tissue
29
epithelium
28
liver
19
adipose tissue
10
brain
2
musculature of body
1
spleen
Project
304
AMP
Genome assembly (visualization)
268
hg19
263
GRCh38
Lab
303
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
43
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
brain
9
+ See 8 more…
primary cell
skeletal muscle myoblast
15
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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