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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
1
March, 2020
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
304
pancreas
258
liver
224
epithelium
148
kidney
124
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
eye
42
vasculature
41
musculature of body
40
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
71
hg19
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
hic
organ_slims!
eye
assembly!
GRCh38
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
muscle of leg
2
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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