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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
total RNA-seq
17
ATAC-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
24
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
8
July, 2019
6
November, 2020
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
95
bam
87
bigWig
60
bed narrowPeak
58
fastq
21
tsv
19
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
133
Homo sapiens
Biosample type
tissue
93
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
503
epithelium
437
pancreas
429
liver
133
connective tissue
101
vasculature
95
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
21
brain
20
vein
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
132
AMP
1
T1D
Genome assembly (visualization)
103
hg19
86
GRCh38
Lab
132
AMP-T2D consortium
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
hic
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
tissue
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
5
7
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
cardiac fibroblast
1
+ See 1 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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