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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
23
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
23
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
Available data
91
bam
74
bigWig
63
bed narrowPeak
58
tsv
18
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
130
Homo sapiens
Biosample type
66
tissue
62
cell line
2
primary cell
Organ
847
pancreas
611
connective tissue
462
adipose tissue
460
epithelium
391
liver
333
heart
328
kidney
198
vasculature
194
blood vessel
166
brain
159
bone element
130
artery
107
limb
81
musculature of body
57
eye
35
nerve
26
embryo
20
lung
18
ureter
17
blood
17
bodily fluid
17
spleen
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
117
GRCh38
82
hg19
Lab
130
AMP-T2D consortium
files.file_type!
hic
target.investigated_as!
narrow histone mark
transcription factor
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
2
tibial artery
1
1
19
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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