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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
424
bigWig
400
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
487
Homo sapiens
Biosample type
486
tissue
2
primary cell
Organ
941
pancreas
786
liver
661
connective tissue
504
epithelium
488
adipose tissue
355
heart
271
kidney
254
brain
228
vasculature
224
blood vessel
158
bone element
139
artery
90
limb
69
blood
69
bodily fluid
52
musculature of body
50
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
488
AMP
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
488
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
ibed
assay_title!
pCHi-C
month_released!
June, 2019
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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