Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
145
Transcription
136
DNA accessibility
47
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
134
May, 2022
May, 2021
47
September, 2023
45
February, 2021
43
September, 2020
19
April, 2020
18
February, 2023
16
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
13
bigWig
6
tsv
4
hic
3
bam
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
335
Homo sapiens
Biosample type
241
primary cell
89
tissue
8
cell line
2
stem cell
Organ
123
pancreas
100
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
232
HPAP
47
KPMP
37
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
14
GRCh38
6
hg19
Lab
232
Klaus Kaestner, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
3
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
ibed
award.project!
AMP
month_released!
May, 2021
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
340 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
+ See 1 more…
tissue
kidney
47
islet of Langerhans
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download