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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
101
DNA binding
Target of assay
954
histone modification
953
histone
481
narrow histone mark
471
broad histone mark
451
transcription factor
328
control
101
RNA binding protein
82
recombinant protein
31
chromatin remodeller
4
other context
4
other post-translational modification
2
nucleotide modification
Date released
30
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
2
June, 2019
1
August, 2021
Available data
102
bigWig
101
bed narrowPeak
99
bam
90
bigBed narrowPeak
89
fastq
9
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
101
Homo sapiens
Biosample type
60
cell line
28
tissue
11
in vitro differentiated cells
2
primary cell
Organ
54
liver
10
blood
10
bodily fluid
10
heart
9
connective tissue
8
pancreas
5
adipose tissue
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
eye
1
kidney
Project
101
AMP
Genome assembly (visualization)
89
GRCh38
87
hg19
Lab
90
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
ibed
bigBed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
cardiac muscle cell
1
retinal pigment epithelial cell
1
See all biosamples
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