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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
7
DNA binding
5
DNA accessibility
Target of assay
7
control
Date released
5
December, 2017
4
February, 2023
August, 2017
2
August, 2021
2
February, 2021
2
September, 2017
1
May, 2022
Available data
3110
bam
bigWig
1675
bed narrowPeak
1511
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
in vitro differentiated cells
3
tissue
1
cell line
1
primary cell
1
stem cell
Organ
7
connective tissue
2
pancreas
1
embryo
1
liver
1
musculature of body
Project
16
AMP
Genome assembly (visualization)
16
hg19
7
GRCh38
Lab
14
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
ibed
bigWig
month_released!
August, 2017
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
islet of Langerhans
2
skeletal muscle tissue
1
cell line
HepG2
1
primary cell
osteoblast
1
stem cell
hESC
1
See all biosamples
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