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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
243
DNA binding
89
Transcription
14
DNA methylation
6
DNA accessibility
Target of assay
161
histone modification
160
histone
93
broad histone mark
66
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
229
fastq
226
bigWig
224
bam
109
bed narrowPeak
89
tsv
73
tagAlign
33
bed bed3+
27
bed broadPeak
23
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
284
tissue
68
in vitro differentiated cells
primary cell
Organ
147
pancreas
125
connective tissue
57
adipose tissue
54
liver
26
musculature of body
Project
352
AMP
Genome assembly (visualization)
229
hg19
207
GRCh38
Lab
352
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
files.file_type!
ibed
lab.title!
Klaus Kaestner, Upenn
biosample_type!
primary cell
BIOSAMPLE
ASSAY
352 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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in vitro differentiated cells
adipocyte
67
1
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