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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
47
WGBS
29
snATAC-seq
26
DNase-seq
17
pCHi-C
9
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
270
DNA binding
256
DNA accessibility
57
DNA methylation
3
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
50
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
24
July, 2019
21
February, 2021
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
593
bigWig
592
bam
373
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
hdf5
1
tar
Organism
1036
Homo sapiens
Biosample type
2503
tissue
1036
primary cell
662
cell line
390
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
537
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
603
hg19
522
GRCh38
Lab
502
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
ibed
organ_slims!
brain
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1036 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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