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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
2
Hi-C
1
FAIRE-seq
Assay category
3
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
3
November, 2017
2
October, 2019
1
July, 2019
Available data
3149
bam
2907
bigWig
1574
bed narrowPeak
1574
tsv
1337
fastq
915
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
ibed
1
bedpe
1
vcf
Organism
6
Homo sapiens
Biosample type
4
cell line
2
primary cell
Organ
4
liver
3
blood vessel
brain
3
epithelium
3
vasculature
1
connective tissue
1
pancreas
1
vein
Project
6
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
Audit category:
1
inconsistent assembly
files.file_type!
ibed
organ_slims!
brain
BIOSAMPLE
ASSAY
6 results
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ChIP-seq
Hi-C
FAIRE-seq
cell line
HepG2
3
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
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