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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
34
total RNA-seq
17
small RNA-seq
13
RRBS
11
WGBS
9
DNase-seq
8
Hi-C
4
single cell RNA-seq
3
FAIRE-seq
2
ATAC-seq
Assay category
70
DNA binding
55
Transcription
24
DNA methylation
14
DNA accessibility
8
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
148
bam
144
bigWig
88
fastq
76
bed narrowPeak
75
bigBed narrowPeak
54
tsv
22
bed bedMethyl
22
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
171
Homo sapiens
Biosample type
83
tissue
61
cell line
27
primary cell
Organ
63
liver
heart
20
brain
19
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
13
epithelium
13
pancreas
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
171
AMP
Genome assembly (visualization)
145
hg19
137
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
ibed
organ_slims!
heart
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
ATAC-seq
tissue
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
right lobe of liver
2
2
1
1
+ See 21 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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