Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
DNase-seq
12
ChIP-seq
2
ATAC-seq
Assay category
45
DNA accessibility
12
DNA binding
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
36
June, 2019
12
August, 2017
5
October, 2019
2
November, 2018
1
March, 2019
1
October, 2017
Available data
803
bam
714
bigWig
471
fastq
424
tsv
306
bed narrowPeak
175
bigBed narrowPeak
80
zippedFastqFolder
65
bed bed3+
57
bed broadPeak
43
bigBed broadPeak
19
tagAlign
7
bed bedMethyl
7
bedpe bed3+
7
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
51
Homo sapiens
Biosample type
56
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
57
AMP
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
55
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
ibed
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
muscle of arm
17
muscle of leg
13
islet of Langerhans
6
2
pancreas
2
6
body of pancreas
4
+ See 4 more…
cell line
Panc1
1
See all biosamples
Download