Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
9
DNase-seq
1
Hi-C
Assay category
21
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
4
June, 2019
4
October, 2019
2
November, 2018
2
September, 2017
Available data
731
bam
654
bigWig
471
fastq
422
tsv
241
bed narrowPeak
117
bigBed narrowPeak
80
zippedFastqFolder
31
bed bed3+
23
bed broadPeak
19
tagAlign
9
bigBed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
31
Homo sapiens
Biosample type
29
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
31
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
Lab
31
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
ibed
BIOSAMPLE
ASSAY
31 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
pancreas
2
tibial nerve
2
cell line
Panc1
1
1
Download