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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
19
ATAC-seq
19
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
19
DNA accessibility
19
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
20
May, 2021
13
October, 2019
12
November, 2019
6
March, 2020
6
November, 2020
3
August, 2021
Available data
56
bam
52
bigWig
39
tsv
15
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
86
Homo sapiens
Biosample type
111
in vitro differentiated cells
89
tissue
86
cell line
45
primary cell
1
stem cell
Organ
70
epithelium
70
pancreas
15
kidney
Project
84
AMP
2
T1D
Genome assembly (visualization)
54
hg19
51
GRCh38
Lab
79
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
86
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
files.file_type!
ibed
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
19
9
6
2
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
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