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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
63
December, 2017
53
November, 2018
33
August, 2017
31
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
678
bam
601
bigWig
464
fastq
418
bed narrowPeak
357
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
682
Homo sapiens
Biosample type
388
cell line
270
tissue
15
in vitro differentiated cells
9
primary cell
Organ
775
pancreas
682
liver
637
connective tissue
477
adipose tissue
414
epithelium
300
heart
279
kidney
184
vasculature
178
blood vessel
164
brain
147
bone element
114
limb
90
artery
80
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
682
AMP
Genome assembly (visualization)
560
hg19
497
GRCh38
Lab
631
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
682 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
2
1
tissue
liver
75
167
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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