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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
42
ATAC-seq
34
ChIP-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
34
DNA binding
Target of assay
17
histone
17
histone modification
11
narrow histone mark
9
transcription factor
8
control
7
recombinant protein
6
broad histone mark
2
RNA binding protein
Date released
June, 2019
13
November, 2019
12
October, 2019
4
December, 2017
3
May, 2019
1
March, 2020
1
May, 2021
Available data
37
bam
29
bed narrowPeak
29
bigWig
4
fastq
tagAlign
2
bigBed narrowPeak
Organism
34
Homo sapiens
Biosample type
25
cell line
4
in vitro differentiated cells
3
primary cell
2
tissue
Organ
22
epithelium
15
pancreas
13
kidney
4
embryo
2
brain
Project
32
AMP
2
T1D
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
34
AMP-T2D consortium
Audit category:
34
inconsistent ontology term
28
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign
month_released!
June, 2019
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
EndoC_BH1
15
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
in vitro differentiated cells
Hepatic endoderm
4
primary cell
kidney epithelial cell
3
tissue
brodmann area 43
1
insular gyrus
1
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