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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
46
October, 2019
28
May, 2019
25
November, 2017
1
October, 2017
Available data
196
bam
172
bigWig
170
bed narrowPeak
tagAlign
94
bigBed narrowPeak
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
100
Homo sapiens
Biosample type
91
tissue
9
primary cell
Organ
466
liver
199
pancreas
131
connective tissue
122
epithelium
100
brain
96
vasculature
93
blood vessel
88
heart
66
limb
65
adipose tissue
60
blood
60
bodily fluid
52
kidney
35
nerve
28
artery
24
musculature of body
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
100
AMP
Genome assembly (visualization)
89
GRCh38
80
hg19
Lab
100
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
tissue
temporal lobe
15
angular gyrus
13
layer of hippocampus
8
brain
6
middle frontal area 46
6
+ See 39 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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