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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
15
DNA binding
2
DNA accessibility
Target of assay
13
transcription factor
2
RNA binding protein
2
broad histone mark
2
histone
2
histone modification
Date released
12
November, 2017
2
August, 2017
2
October, 2019
1
March, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
12
cell line
4
primary cell
1
tissue
Organ
12
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
pancreas
Project
17
AMP
Genome assembly (visualization)
GRCh38
241
hg19
Lab
16
AMP-T2D consortium
1
Mark McCarthy, Oxford
files.file_type!
tagAlign
assembly!
GRCh38
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
12
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
tissue
islet of Langerhans
1
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