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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
11
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
7
histone
7
histone modification
4
broad histone mark
4
control
3
narrow histone mark
Date released
11
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
28
Homo sapiens
Biosample type
25
tissue
3
primary cell
Organ
300
pancreas
228
epithelium
205
liver
149
kidney
125
heart
96
connective tissue
93
bone element
59
adipose tissue
55
eye
43
vasculature
41
blood vessel
33
brain
28
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
60
hg19
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
tagAlign
assembly!
GRCh38
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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