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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
89
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
86
histone
86
histone modification
61
narrow histone mark
25
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
47
October, 2019
30
June, 2019
25
May, 2019
18
November, 2017
12
July, 2019
2
November, 2018
1
October, 2017
Available data
215
bam
214
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
135
Homo sapiens
Biosample type
121
tissue
14
primary cell
Organ
627
pancreas
566
connective tissue
500
liver
424
adipose tissue
289
epithelium
222
heart
205
kidney
187
vasculature
183
blood vessel
135
brain
124
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
Project
135
AMP
Genome assembly (visualization)
135
GRCh38
121
hg19
Lab
135
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
5
14
1
temporal lobe
13
1
1
angular gyrus
12
layer of hippocampus
6
middle frontal area 46
5
+ See 51 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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