Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
149
ChIP-seq
74
single cell RNA-seq
71
ATAC-seq
8
Hi-C
6
DNase-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
406
Transcription
149
DNA binding
79
DNA accessibility
8
3D chromatin structure
2
DNA methylation
Target of assay
129
histone
129
histone modification
65
broad histone mark
64
narrow histone mark
18
transcription factor
9
RNA binding protein
2
control
Date released
153
July, 2018
147
August, 2017
72
September, 2018
53
November, 2019
42
October, 2018
41
May, 2021
39
April, 2018
26
February, 2021
18
May, 2022
11
March, 2020
8
October, 2019
7
September, 2017
6
July, 2019
5
October, 2017
3
August, 2018
3
March, 2019
3
November, 2018
3
October, 2022
2
June, 2019
1
June, 2018
1
May, 2019
Available data
635
bam
607
bigWig
408
tsv
363
fastq
212
bed narrowPeak
89
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
tagAlign
7
hic
6
bedpe bed3+
5
bigBed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
644
Homo sapiens
Biosample type
401
tissue
185
primary cell
58
cell line
Organ
644
pancreas
588
connective tissue
583
liver
425
adipose tissue
306
epithelium
184
heart
161
vasculature
155
blood vessel
129
kidney
121
brain
96
limb
89
artery
70
bone element
60
musculature of body
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
Project
635
AMP
6
T1D
3
HPAP
Genome assembly (visualization)
644
hg19
627
GRCh38
Lab
619
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
55
inconsistent ontology term
3
audit script error
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
644 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
DNase-seq
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
266
25
42
2
1
1
1
body of pancreas
2
26
4
2
2
endocrine pancreas
14
pancreas
1
7
1
2
1
1
primary cell
pancreatic beta cell
10
7
12
7
1
pancreatic alpha cell
10
7
12
6
1
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
1
pancreatic endocrine cell
23
+ See 5 more…
cell line
EndoC_BH1
33
13
3
1
Panc1
6
1
1
See all biosamples
Download