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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
Assay category
79
DNA binding
Target of assay
50
histone
50
histone modification
29
transcription factor
28
narrow histone mark
22
broad histone mark
1
RNA binding protein
1
recombinant protein
Date released
39
August, 2017
32
September, 2018
6
November, 2017
1
December, 2017
1
November, 2018
Available data
83
fastq
82
bam
80
bigWig
42
bed narrowPeak
14
bed bed3+
9
bigBed narrowPeak
tagAlign
2
bed broadPeak
Organism
79
Homo sapiens
Biosample type
44
primary cell
22
tissue
7
cell line
6
in vitro differentiated cells
Organ
54
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
7
liver
1
embryo
Project
79
AMP
Genome assembly (visualization)
77
hg19
72
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
79
missing controlled_by
Audit category:
inconsistent control run_type
5
inconsistent control read length
files.file_type!
tagAlign
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
10
cell line
HepG2
7
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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