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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
20
histone
20
histone modification
20
transcription factor
11
narrow histone mark
9
broad histone mark
8
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
11
December, 2017
7
November, 2017
3
November, 2018
2
February, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tagAlign
10
bed bed3+
Organism
40
Homo sapiens
Biosample type
17
in vitro differentiated cells
10
cell line
6
tissue
5
primary cell
2
stem cell
Organ
11
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
40
AMP
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
40
inconsistent control read length
3
inconsistent control run_type
2
inconsistent assembly
files.file_type!
tagAlign
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
10
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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