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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
19
transcription factor
18
histone
18
histone modification
10
narrow histone mark
8
broad histone mark
8
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
10
November, 2017
8
December, 2017
November, 2018
2
February, 2018
1
October, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tagAlign
9
bed bed3+
Organism
37
Homo sapiens
Biosample type
14
in vitro differentiated cells
10
cell line
6
tissue
5
primary cell
2
stem cell
Organ
11
liver
9
pancreas
6
connective tissue
5
epithelium
embryo
Project
37
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
37
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
files.file_type!
tagAlign
month_released!
November, 2018
organ_slims!
embryo
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
primitive gut cell
2
cell line
HepG2
10
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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