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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
17
pCHi-C
16
snATAC-seq
4
ChIP-seq
Assay category
100
Transcription
16
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
69
May, 2021
45
May, 2020
February, 2023
16
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
tagAlign
Organism
137
Homo sapiens
Biosample type
120
primary cell
13
tissue
4
cell line
Organ
16
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3832
AMP
248
HPAP
137
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
129
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
tagAlign
month_released!
February, 2023
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
pCHi-C
snATAC-seq
ChIP-seq
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
2
4
2
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
See all biosamples
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