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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
158
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
100
histone modification
99
histone
52
broad histone mark
47
narrow histone mark
33
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
681
February, 2021
328
November, 2017
291
May, 2020
273
August, 2021
272
August, 2017
257
October, 2019
218
June, 2019
200
May, 2022
189
February, 2023
183
May, 2021
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
9
October, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
272
Homo sapiens
Biosample type
225
tissue
in vitro differentiated cells
47
primary cell
Organ
172
pancreas
49
adipose tissue
49
connective tissue
34
liver
29
epithelium
11
musculature of body
Project
272
AMP
Genome assembly (visualization)
189
hg19
183
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
33
89
1
1
liver
28
3
1
subcutaneous abdominal adipose tissue
28
3
white adipose tissue
12
skeletal muscle tissue
7
4
+ See 4 more…
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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