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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
332
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
304
transcription factor
88
recombinant protein
58
RNA binding protein
28
chromatin remodeller
23
histone
23
histone modification
12
narrow histone mark
11
broad histone mark
2
other context
2
other post-translational modification
Date released
208
November, 2017
87
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
450
Homo sapiens
Biosample type
1703
tissue
450
cell line
438
primary cell
247
in vitro differentiated cells
3
stem cell
Organ
259
liver
60
artery
60
blood vessel
60
heart
60
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
446
AMP
4
T1D
Genome assembly (visualization)
513
hg19
450
GRCh38
Lab
450
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
13
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
450 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
252
5
1
1
smooth muscle cell of the coronary artery
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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