Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
53
August, 2017
43
December, 2017
37
May, 2021
24
February, 2018
1
August, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
158
Homo sapiens
Biosample type
629
tissue
464
cell line
179
primary cell
158
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
22
embryo
19
epithelium
15
liver
Project
158
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
121
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
53
embryonic stem cell
40
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
+ See 6 more…
See all biosamples
Download