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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
56
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
22
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
47
May, 2021
16
February, 2023
8
February, 2018
6
March, 2020
5
August, 2017
5
August, 2021
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
26
bam
23
fastq
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
107
Homo sapiens
Biosample type
796
tissue
550
primary cell
192
cell line
107
in vitro differentiated cells
7
stem cell
Organ
29
connective tissue
8
embryo
3
epithelium
1
adipose tissue
1
liver
Project
107
AMP
Genome assembly (visualization)
280
hg19
GRCh38
4
hg18
Lab
53
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
tagAlign
assembly!
GRCh38
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
1
adipocyte
5
8
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
chondrocyte
5
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