Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
116
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
116
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
42
August, 2017
32
December, 2017
31
February, 2018
26
February, 2021
21
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
312
Homo sapiens
Biosample type
2292
tissue
917
primary cell
629
cell line
312
in vitro differentiated cells
9
stem cell
Organ
71
connective tissue
25
embryo
14
epithelium
8
liver
1
adipose tissue
1
heart
Project
312
AMP
Genome assembly (visualization)
249
hg19
216
GRCh38
4
hg18
Lab
268
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
tagAlign
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
41
8
1
1
embryonic stem cell
7
29
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
14
1
+ See 30 more…
See all biosamples
Download