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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
170
ChIP-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
283
DNA accessibility
170
DNA binding
57
DNA methylation
7
3D chromatin structure
Target of assay
136
histone
136
histone modification
71
broad histone mark
65
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
50
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
593
bigWig
592
bam
400
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
967
Homo sapiens
Biosample type
2352
tissue
967
primary cell
642
cell line
354
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
522
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
508
hg19
424
GRCh38
Lab
487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
organ_slims!
brain
BIOSAMPLE
ASSAY
967 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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