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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
169
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
169
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
599
bam
404
fastq
285
bed narrowPeak
270
tsv
153
zippedFastqFolder
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
978
Homo sapiens
Biosample type
2476
tissue
978
primary cell
577
cell line
343
in vitro differentiated cells
10
stem cell
Organ
397
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
musculature of body
12
heart
10
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
533
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
519
hg19
429
GRCh38
Lab
498
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
978 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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