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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
14
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
14
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
32
June, 2019
11
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
67
Homo sapiens
Biosample type
67
tissue
14
primary cell
Organ
539
connective tissue
489
pancreas
480
adipose tissue
313
heart
299
kidney
291
liver
158
bone element
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
48
hg19
42
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
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