Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
136
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
78
histone
78
histone modification
39
narrow histone mark
39
transcription factor
38
broad histone mark
22
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
47
August, 2017
39
February, 2018
31
December, 2017
26
February, 2021
20
August, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
329
Homo sapiens
Biosample type
2294
tissue
954
primary cell
639
cell line
329
in vitro differentiated cells
7
stem cell
Organ
70
connective tissue
26
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
329
AMP
Genome assembly (visualization)
255
hg19
228
GRCh38
4
hg18
Lab
277
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
tagAlign
bed bed3+
BIOSAMPLE
ASSAY
329 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
46
5
7
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
15
4
1
+ See 30 more…
See all biosamples
Download