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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
16
total RNA-seq
11
ATAC-seq
1
ChIP-seq
Assay category
56
Transcription
11
DNA accessibility
1
DNA binding
Target of assay
1
control
Date released
705
February, 2021
328
November, 2017
307
May, 2021
293
August, 2017
293
August, 2021
291
May, 2020
257
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
October, 2017
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
58
fastq
19
zippedFastqFolder
17
bigWig
15
bam
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
Organism
68
Homo sapiens
Biosample type
59
primary cell
9
tissue
Organ
24
pancreas
19
epithelium
2
brain
1
adipose tissue
1
connective tissue
1
spleen
Project
59
HPAP
9
AMP
Genome assembly (visualization)
11
GRCh38
7
hg19
Lab
59
Klaus Kaestner, Upenn
8
AMP-T2D consortium
1
Stephen Parker, UMich
files.file_type!
tagAlign
bed bed3+
BIOSAMPLE
ASSAY
68 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
body of pancreas
4
brain
1
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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