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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
78
bam
56
bed narrowPeak
55
bigWig
48
bigBed narrowPeak
7
tsv
1
bed bedMethyl
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
913
pancreas
696
liver
650
connective tissue
492
epithelium
479
adipose tissue
349
heart
269
kidney
217
vasculature
214
blood vessel
159
bone element
134
brain
131
artery
85
limb
69
blood
69
bodily fluid
56
eye
44
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
files.file_type!
tagAlign
bigBed bedMethyl
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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