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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
35
transcription factor
29
histone
29
histone modification
17
narrow histone mark
12
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
39
August, 2017
11
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
Available data
68
fastq
67
bam
65
bigWig
27
bed narrowPeak
15
bigBed narrowPeak
14
bed bed3+
tagAlign
2
bed broadPeak
Organism
64
Homo sapiens
Biosample type
23
primary cell
22
tissue
13
cell line
6
in vitro differentiated cells
Organ
54
pancreas
epithelium
17
connective tissue
13
liver
12
adipose tissue
1
embryo
Project
64
AMP
Genome assembly (visualization)
62
hg19
55
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
64
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
tagAlign
bigBed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
tissue
white adipose tissue
12
islet of Langerhans
10
cell line
HepG2
13
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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