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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
179
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
179
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
109
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
41
August, 2017
31
June, 2019
27
October, 2019
22
July, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
690
Homo sapiens
Biosample type
2044
tissue
690
primary cell
610
cell line
311
in vitro differentiated cells
10
stem cell
Organ
305
epithelium
275
pancreas
30
connective tissue
29
vasculature
26
blood vessel
21
kidney
19
vein
15
brain
12
musculature of body
9
heart
6
liver
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
350
AMP
227
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
412
hg19
362
GRCh38
Lab
315
AMP-T2D consortium
227
Klaus Kaestner, Upenn
147
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
bigBed bedMethyl
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
690 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
13
31
1
Langerhans cell
85
pancreatic beta cell
21
12
13
16
1
monocyte
54
1
1
1
exocrine cell
39
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