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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
109
ChIP-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
281
Transcription
217
DNA accessibility
109
DNA binding
7
3D chromatin structure
1
DNA methylation
Target of assay
81
histone
81
histone modification
44
broad histone mark
37
narrow histone mark
21
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
122
May, 2021
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
22
July, 2019
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
August, 2017
5
December, 2019
5
May, 2019
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
421
bigWig
415
bam
227
bed narrowPeak
162
tsv
151
fastq
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
632
Homo sapiens
Biosample type
2031
tissue
632
primary cell
549
cell line
354
in vitro differentiated cells
10
stem cell
Organ
396
epithelium
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
musculature of body
12
heart
9
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
339
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
334
hg19
246
GRCh38
Lab
304
AMP-T2D consortium
172
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
28
audit script error
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tagAlign
bigBed bedMethyl
organ_slims!
pancreas
BIOSAMPLE
ASSAY
632 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
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