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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
63
December, 2017
49
November, 2018
28
August, 2017
18
August, 2021
5
October, 2019
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
466
Homo sapiens
Biosample type
366
cell line
85
tissue
15
in vitro differentiated cells
Organ
466
liver
199
pancreas
131
connective tissue
128
heart
122
epithelium
100
brain
96
vasculature
93
blood vessel
66
limb
65
adipose tissue
60
blood
60
bodily fluid
52
kidney
35
nerve
28
artery
24
musculature of body
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
466
AMP
Genome assembly (visualization)
387
hg19
329
GRCh38
Lab
448
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
xls
BIOSAMPLE
ASSAY
466 results
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Clear Filters
ChIP-seq
cell line
HepG2
366
tissue
liver
75
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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