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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
55
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
55
DNA binding
Target of assay
47
transcription factor
8
histone
8
histone modification
7
RNA binding protein
4
broad histone mark
4
chromatin remodeller
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
187
June, 2019
53
November, 2017
9
November, 2018
9
October, 2019
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1511
tsv
1071
fastq
1000
bigBed narrowPeak
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
261
Homo sapiens
Biosample type
178
tissue
48
cell line
35
primary cell
Organ
78
kidney
52
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
261
AMP
Genome assembly (visualization)
246
GRCh38
237
hg19
Lab
259
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
zippedFastqFolder
month_released!
August, 2017
BIOSAMPLE
ASSAY
261 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
47
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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