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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
53
November, 2017
2
August, 2017
2
October, 2019
Available data
3183
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1346
fastq
833
bigBed narrowPeak
tagAlign
161
txt
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
57
Homo sapiens
Biosample type
47
cell line
10
primary cell
Organ
47
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
57
AMP
Genome assembly (visualization)
57
hg19
42
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
zippedFastqFolder
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
cell line
HepG2
47
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
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